Plot Regime Module Diagnostics — plot.regime_module

Draw scatterplots comparing selected PCA scores with selected module summaries from regime_module_diagnostics().

Usage

# S3 method for class 'regime_module_diagnostics'
plot(
  x,
  pc,
  comparison,
  main = NULL,
  xlab = NULL,
  ylab = NULL,
  point_col = "#4C78A8",
  line_col = "#1B4F72",
  ribbon_col = "grey70",
  point_alpha = 0.5,
  pch = 21,
  lwd = 2,
  n_boot = 1000,
  ci_level = 0.99,
  seed = 1L,
  ...
)

Arguments

x: A regime_module_diagnostics object.
pc: Principal component name(s), such as "PC1".
comparison: Module comparison name(s).
main: Optional panel title(s).
xlab, ylab: Optional axis labels. Recycled across panels.
point_col, line_col: Point fill and fitted-line colors.
ribbon_col: Ribbon color for bootstrap confidence intervals.
point_alpha, pch, lwd: Graphical controls.
n_boot: Number of bootstrap replicates for confidence ribbons. Set to 0 to omit the ribbon and draw only the fitted line.
ci_level: Confidence level for bootstrap ribbons.
seed: Optional random seed for reproducible bootstrap curves.
...: Additional graphical parameters passed to graphics::plot().

Value

Invisibly returns x.